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| 2007 Live-cell Course Info | Home • | '07 Brochure • | Apply • | Prof. Pawley | |||||
| Participating
in the 3D IP Workshop |
Sponsored By | ||||||||
| Overview | |||||||||
• UBC
Brain Research Centre |
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| Lectures Draft | |||||||||
| Images | Background | ||||||||
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| Faculty | The 3D IP
Workshop follows the UBC Live-Cell Course after a rest day. Although
digital image processing in one form or another, is taught in
thousands of venues every week, it is unusual for these workshops to
concentrate on techniques optimized for the processing of microscopical
image data, and even more unusual to concentrate on processing to enhance
the graphical display and measurement of image data having > 2 dimensions.
The 3D IP Workshop aims to fill this gap. Proper analysis and display
of such data is essential to progress in modern biological research. |
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| Companies Represented |
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| Course Alumni |
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| Future Course | |||||||||
| Brochure | |||||||||
| APPLY | |||||||||
| 3-D Image Processing Info |
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| The aims of the workshop | |||||||||
| Overview | |||||||||
| • To
introduce students to all the important concepts needed to understand
3D image processing: pixels,
voxels, sampling, transparency, projection, measurement, thresholding,
segmentation. • To guide students to an appreciation of the features of a representative sample of the many software packages available for optimizing the analysis and display of 3D and 4D microscopical data sets. This familiarity is important not only to let them process their own data but, even more, to enable them to make an informed choice when purchasing a system for their own lab. • To give manufacturers a chance to introduce and explain the pertinent features of their software packages to students likely to need this abilities, and also, by working with students, to identify problem areas where improvements or additions to their products are needed. • Instruction will include a mix of lectures on basic concepts and hands-on use of the packages available. In general, we will emphasize the hands-on aspect as this is something that the students will have more difficulty doing after they leave. We aim to have no more than 2 students to a computer. For all labs, we expect to have at least one faculty member available for 1-on-2 mentoring, for every 3 computers. • While some elementary laboratory sessions involve following step-by step instructions, others will give only general directions for the display of data. Although most exercises are designed to operate on "canned" data, there will be some opportunity, especially in the evenings, to work on data collected by the student during the 3D Live-Cell course. • The final section of the Workshop is set aside for students to display short PowerPoint presentations that they have assembled during the workshop. |
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| Program | |||||||||
| British Columbia Tourist Info |
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| UBC Info | |||||||||
| Relationship to Live Cell Course | |||||||||
| 3D IP follows the Live-Cell Course and all Workshop students have taken the Live-Cell course at some time. As the end of this course includes about 1.5 days of 3D IP, many basic concepts will be covered there. The 3D IP Workshop covers more advanced concepts. | |||||||||
| Role of the software vendor | |||||||||
| Who
gets invited While we do want to expose the students to carefully a selected variety of software products. 3D IP is only 3 days: not long enough to permit an open door policy in terms of which companies are invited to participate. In general, we try to invite companies representing software that covers a wide range of differing capabilities: starting from Image-J, Photoshop and PowerPoint, and progressing to packages costing over $25,000 We cannot automatically accept every vendor that currently offers software that might be useful. Although some consideration will be given to those vendors who provide hardware and personnel to support the 3D Live-Cell course, in general, choices are made based on what the organizers see as the value-for-money of the software offered, in terms of 3D capabilities, as well as the vendor's willingness to provide suitable hardware and experienced support personnel to help run the workshop. What is expected Because we have a limited amount of space for setting up equipment, manufacturers that bring hardware may be asked to allow their equipment to be used to demonstrate other, generally "open-source" software during the early parts of the course. Reps who are present are also expected to help students getting their equipment working and to serve as mentors when students have trouble using elementary software. In order to catch Live-Cell Course students that do not plan to participate in the 3D IP Workshop, some vendors of 3D software choose to participate in the last two days of the Live-cell Course as well as the Workshop. Presentations Given the limited time, it is recommended that presentations "compare and contrast" your software to that already presented rather than "starting from the beginning." It is also recommended that you confine your comments to describing the capabilities of the software on the machines rather than giving a prolonged introduction to the "history of the company...". A detailed program of lectures and labs will be available before the workshop starts to help you to "tune" your presentation to that of those presented earlier. If your AV needs spread beyond a 1024 x 768 digital projector, please contact the organizers. Literature Lodging Not yet updated for 2007, please check back in April 2007: |
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| What we provide | |||||||||
In general we provide a venue, students, and faculty. We also provide a fair chance for selected vendors to teach, and to learn from, interested students from many countries. We provide access to a fair share of the table space available for the Workshop for vendors to install their hardware. We provide WWW access, however, as the course takes place in a university setting, you cannot use this access for setting up commercial web sites. Course content, lecture sequence and other pedagogical matters are entirely controlled by the organizers: Jim Pawley, Felix Margadant, Andres Kriete, Ping Chin Cheng, Glen MacDonald, Robert Murphy, and Badri Roysam. Food |
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| Tuition | |||||||||
| $1,200 US (Incl. lunches, snacks & Farewell Dinner) | |||||||||
3D Microscopy
of Living Cells Course |
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